Basic Usage Example | References
Package: metagam 0.4.1
Oystein Sorensen
metagam: Meta-Analysis of Generalized Additive Models
Meta-analysis of generalized additive models and generalized additive mixed models. A typical use case is when data cannot be shared across locations, and an overall meta-analytic fit is sought. 'metagam' provides functionality for removing individual participant data from models computed using the 'mgcv' and 'gamm4' packages such that the model objects can be shared without exposing individual data. Furthermore, methods for meta-analysing these fits are provided. The implemented methods are described in Sorensen et al. (2020), <doi:10.1016/j.neuroimage.2020.117416>, extending previous works by Schwartz and Zanobetti (2000) and Crippa et al. (2018) <doi:10.6000/1929-6029.2018.07.02.1>.
Authors:
metagam_0.4.1.tar.gz
metagam_0.4.1.zip(r-4.7-any)metagam_0.4.1.zip(r-4.6-any)metagam_0.4.1.zip(r-4.5-any)
metagam_0.4.1.tgz(r-4.6-any)metagam_0.4.1.tgz(r-4.5-any)
metagam_0.4.1.tar.gz(r-4.7-any)metagam_0.4.1.tar.gz(r-4.6-any)
metagam_0.4.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
metagam/json (API)
| # Install 'metagam' in R: |
| install.packages('metagam', repos = c('https://lifebrain.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/lifebrain/metagam/issues
Pkgdown/docs site:https://lifebrain.github.io
Last updated from:ae84c2459e. Checks:2 NOTE, 7 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | NOTE | 188 | ||
| source / vignettes | OK | 213 | ||
| linux-release | OK | 156 | ||
| macos-release | OK | 218 | ||
| macos-oldrel | OK | 187 | ||
| windows-devel | NOTE | 90 | ||
| windows-release | OK | 118 | ||
| windows-oldrel | OK | 79 | ||
| wasm-release | OK | 122 |
Exports:getmasdmetagamplot_between_study_sdplot_dominanceplot_heterogeneitystrip_rawdata
Dependencies:clicpp11digestfarverggplot2gluegtableisobandlabelinglatticelifecyclemathjaxrMatrixmetadatmetaformgcvnlmenumDerivpbapplyR6RColorBrewerrlangS7scalesvctrsviridisLitewithr
Introduction
Last update: 2022-01-18
Started: 2020-01-30
Simultaneous confidence intervals and p-values
What can go wrong when combining p-values? | A better way to compute p-values? | Simultaneous confidence intervals | Combining simultaneous confidence intervals | Does it work? | References
Last update: 2022-01-16
Started: 2021-11-12
Dominance Plots
Simulation | Fit GAMs | Meta-Analysis | Dominance Analysis
Last update: 2022-01-14
Started: 2020-01-30
Heterogeneity Plots
Simulation | Fit GAMs | Meta-Analysis | References
Last update: 2022-01-14
Started: 2020-01-30
Multivariate Smooth Terms
GAMs with Tensor Interaction Terms | Fitting GAMs with Tensor Interaction Terms and Removing Rawdata | Meta-Analyzing GAMs with Tensor Interaction Terms | References
Last update: 2022-01-14
Started: 2020-02-05
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| metagam: Meta-analysis of generalized additive models. | metagam-package |
| Meta-analysis of generalized additive models | metagam |
| Plot between-study standard deviation | plot_between_study_sd |
| Dominance plot | plot_dominance |
| Heterogeneity Plot | plot_heterogeneity |
| Plot estimated smooth terms | plot.metagam |
| Print method for metagam objects. | print.metagam |
| Print method for striprawdata | print.striprawdata |
| Print output from summary of metagam fit. | print.summary.metagam |
| Strip rawdata from a generalized additive model | strip_rawdata strip_rawdata.bam strip_rawdata.gam strip_rawdata.gamm strip_rawdata.list |
| Summary method for metagam objects | summary.metagam |
| Summary method for GAMs stripped for rawdata | summary.striprawdata |