Package: ggseg3d 1.6.3

Athanasia Mo Mowinckel

ggseg3d: Tri-Surface Mesh Plots for Brain Atlases

Mainly contains a plotting function ggseg3d(), and data of two standard brain atlases (Desikan-Killiany and aseg). By far, the largest bit of the package is the data for each of the atlases. The functions and data enable users to plot tri-surface mesh plots of brain atlases, and customise these by projecting colours onto the brain segments based on values in their own data sets. Functions are wrappers for 'plotly'. Mowinckel & Vidal-Piñeiro (2020) <doi:10.1177/2515245920928009>.

Authors:Athanasia Mo Mowinckel [aut, cre], Didac Vidal-Piñeiro [aut]

ggseg3d_1.6.3.tar.gz
ggseg3d_1.6.3.zip(r-4.5)ggseg3d_1.6.3.zip(r-4.4)ggseg3d_1.6.3.zip(r-4.3)
ggseg3d_1.6.3.tgz(r-4.4-any)ggseg3d_1.6.3.tgz(r-4.3-any)
ggseg3d_1.6.3.tar.gz(r-4.5-noble)ggseg3d_1.6.3.tar.gz(r-4.4-noble)
ggseg3d_1.6.3.tgz(r-4.4-emscripten)ggseg3d_1.6.3.tgz(r-4.3-emscripten)
ggseg3d.pdf |ggseg3d.html✨
ggseg3d/json (API)
NEWS

# Install 'ggseg3d' in R:

install.packages('ggseg3d', repos = c('https://lifebrain.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ggseg/ggseg3d/issues

Datasets:

aseg_3d - FreeSurfer automatic subcortical segmentation of a brain volume
dk_3d - Desikan-Killiany Cortical Atlas

On CRAN:

7.60 score 34 stars 13 packages 149 scripts 318 downloads 1 mentions 6 exports 70 dependencies

Last updated 1 years agofrom:55bdedcea6. Checks:OK: 1 NOTE: 6. Indexed: no.

Target	Result	Date
Doc / Vignettes	OK	Nov 16 2024
R-4.5-win	NOTE	Nov 16 2024
R-4.5-linux	NOTE	Nov 16 2024
R-4.4-win	NOTE	Nov 16 2024
R-4.4-mac	NOTE	Nov 16 2024
R-4.3-win	NOTE	Nov 16 2024
R-4.3-mac	NOTE	Nov 16 2024

Exports:add_glassbrain as_ggseg3d_atlas ggseg3d is_ggseg3d_atlas pan_camera remove_axes

Dependencies:askpass base64enc bslib cachem cli colorspace cpp11 crosstalk curl data.table digest dplyr evaluate fansi farver fastmap fontawesome fs generics ggplot2 glue gtable highr htmltools htmlwidgets httr isoband jquerylib jsonlite knitr labeling later lattice lazyeval lifecycle magrittr MASS Matrix memoise mgcv mime munsell nlme openssl pillar pkgconfig plotly promises purrr R6 rappdirs RColorBrewer Rcpp rlang rmarkdown sass scales stringi stringr sys tibble tidyr tidyselect tinytex utf8 vctrs viridisLite withr xfun yaml

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Add glass brain to ggseg3d plot	add_glassbrain
FreeSurfer automatic subcortical segmentation of a brain volume	aseg_3d
Desikan-Killiany Cortical Atlas	dk_3d
`ggseg3d_atlas` class	as_ggseg3d_atlas ggseg3d_atlas ggseg3d_atlas-class
Check if is ggseg_atlas-class	is_ggseg3d_atlas
Pan camera position of ggseg3d plot	pan_camera
Remove axis information from ggseg3d plot	remove_axes