What's in a brain atlas | Your first brain plot | Arranging views | Showing only certain hemispheres or views | Plotting your own data | Faceting | Highlighting specific regions | Scales and themes | Going further | Finding more atlases
This package is considered a duplicate. The official version of this package is found at:https://ggsegverse.r-universe.dev/ggseg
Package: ggseg 2.2.1.9007
Athanasia Mo Mowinckel
ggseg: Plotting Tool for Brain Atlases
Provides a 'ggplot2' geom and position for visualizing brain region data on cortical, subcortical, and white matter tract atlases. Brain atlas geometries are stored as polygon data, enabling seamless integration with the 'ggplot2' ecosystem including faceting, custom scales, and themes. Mowinckel & Vidal-Piñeiro (2020) <doi:10.1177/2515245920928009>.
Authors:
ggseg_2.2.1.9007.tar.gz
ggseg_2.2.1.9007.zip(r-4.7-any)ggseg_2.2.1.9007.zip(r-4.6-any)ggseg_2.2.1.9007.zip(r-4.5-any)
ggseg_2.2.1.9007.tgz(r-4.6-any)ggseg_2.2.1.9007.tgz(r-4.5-any)
ggseg_2.2.1.9007.tar.gz(r-4.7-any)ggseg_2.2.1.9007.tar.gz(r-4.6-any)
ggseg_2.2.1.9007.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ggseg/json (API)
| # Install 'ggseg' in R: |
| install.packages('ggseg', repos = c('https://lifebrain.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ggsegverse/ggseg/issues
Pkgdown/docs site:https://ggsegverse.github.io
Last updated from:ccb3e8e98f. Checks:9 OK. Indexed: no.
The latest version of this package failed to build. Look at thebuild logs for more information.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 159 | ||
| source / vignettes | OK | 225 | ||
| linux-release | OK | 155 | ||
| macos-release | OK | 139 | ||
| macos-oldrel | OK | 103 | ||
| windows-devel | OK | 115 | ||
| windows-release | OK | 125 | ||
| windows-oldrel | OK | 122 | ||
| wasm-release | OK | 111 |
Exports:annotate_brainasegbrain_joinbrain_test_plotcoord_braindkgeom_braingeom_brain_sfGeomBrainggsegposition_brainposition_brain_sfreposition_brainscale_brainscale_brain_manualscale_brain2scale_color_brainscale_color_brain_manualscale_color_brain2scale_colour_brainscale_colour_brain_manualscale_colour_brain2scale_continous_brainscale_fill_brainscale_fill_brain_manualscale_fill_brain2scale_labs_brainscale_x_brainscale_y_brainstat_brainStatBrainsuittheme_braintheme_brain2theme_custombraintheme_darkbraintracula
Dependencies:clicpp11dplyrfarvergenericsgeometriesggplot2ggseg.formatsgluegtableisobandlabelinglifecyclemagrittrpillarpkgconfigpurrrR6RColorBrewerRcpprlangS7scalessfheadersstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr
Getting started with ggseg
Last update: 2026-08-05
Started: 2018-08-30
How geom_brain() works
The brain shape is drawn by a stat | Repeated regions are combined | Faceting comes for free | Colour, including bins, is just a scale | The three pieces, if you want to build on them
Last update: 2026-08-05
Started: 2026-07-27
Plotting external data
How matching works | A minimal example | Constraining matches with extra columns | Faceting across groups | Troubleshooting | Full control with sf
Last update: 2026-08-05
Started: 2026-02-19
Arranging brain views
Cortical atlases | Stacking all views | Subcortical and tract atlases | Horizontal and vertical | Grid layouts | Picking specific views | Grouping by slice type | Adding view labels | Zooming in on regions of interest | Focus on the regions in your data | Name the focus regions explicitly | Control the margin with zoom_pad | Dropping the grey context | The sf workflow
Last update: 2026-06-15
Started: 2026-02-19
Reading FreeSurfer stats files
Reading a single stats file | Reading stats files across subjects | Reading FreeSurfer stats tables | Cleaning label suffixes | Filtering non-region rows
Last update: 2026-06-15
Started: 2026-02-19
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Add view labels to brain atlas plots | annotate_brain |
| Join user data with a brain atlas | brain_join |
| Render a brain atlas with default snapshot styling | brain_test_plot |
| Keep brain shapes undistorted | coord_brain |
| Plot brain atlas regions | GeomBrain geom_brain StatBrain |
| Arrange brain atlas views | position_brain |
| Reposition brain slices | reposition_brain |
| Colour and fill scales from brain atlas palettes | scale_brain scale_color_brain scale_colour_brain scale_fill_brain |
| Manual colour and fill scales for brain plots | scale_brain_manual scale_color_brain_manual scale_colour_brain_manual scale_fill_brain_manual |
| Deprecated scale functions | scale_brain2 scale_brain2-deprecated scale_color_brain2 scale_colour_brain2 scale_fill_brain2 |
| Axis and label scales for brain atlas plots | scale_continous_brain scale_labs_brain scale_x_brain scale_y_brain |
| Stat-first constructor for a brain atlas layer | stat_brain |
| Themes for brain atlas plots | theme_brain theme_brain2 theme_custombrain theme_darkbrain |